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test this about site map how to cite help home search blast go term finder go slim mapper text search primers patmatch advanced search gbrowse c. albicans c. dubliniensis c. glabrata c. parapsilosis jbrowse c. albicans c. dubliniensis c. glabrata c. parapsilosis sequence gene/seq resources patmatch primers genome versions chromosome history download sequence go what is go? go slim mapper go term finder go consortium go file downloads tools batch download pathways phenotypes blast c. albicans genome snapshot c. dubliniensis genome snapshot c. glabrata genome snapshot c. parapsilosis genome snapshot literature full-text search (textpresso) highlighted topics laboratory strains and lineage download batch download go annotations chromosomal features sequence datasets browse downloads community search cgd colleagues find candida labs colleague update community news job opportunities meetings & courses nomenclature guide external resources gene registry about cgd this is the home of the candida genome database, a resource for genomic sequence data and gene and protein information for candida albicans and related species. cgd is based on the saccharomyces genome database and is funded by the national institute of dental & craniofacial research at the us national institutes of health . meetings & courses 14th asm conference on candida and candidiasis providence, rhode island, usa april 15 - 19, 2018; abstract submission deadline: february 2, 2018 fungal pathogen genomics hinxton, cambridge, uk may 13 - 18, 2018; application deadline: february 2, 2018 harnessing diversity to understand molecular mechanisms, pathogenicity, and fungal factories - gordon research conference holderness, new hampshire, usa june 17 - 22, 2018; applications must be submitted by may 20, 2018. 6th central european summer course and 3th rising stars in mycology – biology of pathogenic fungi szeged, hungary july 6 - 11, 2018; abstract submission deadline: may 15, 2018. yeast genetics & genomicss - cold spring harbor laboratory course cold spring harbor, new york, usa july 24 - august 13, 2018; applications due by april 15, 2018. course in molecular mycology: current approaches to fungal pathogenesis marine biological lab at woods hole, massachusetts, usa july 30 to august 15, 2018; application deadline: march 30, 2018 yeast genetics meeting stanford, california, usa august 22 - 26, 2018 immunology of fungal infections - gordon research seminar galveston, texas, us, usa january 12 - 13, 2019; applications due by december 15, 2018 new and noteworthy server maintenance tomorrow morning the server hosting cgd will need to go offline for maintenance around 10 am (pacific time, 5 pm gmt) tomorrow, april 28. the downtime should last about an hour. we apologize for the inconvenience. (posted april 27, 2016) -- title of the item text of item here (posted date, 2014) -- c. lusitaniae strain cbs 6936 sequence and blast datasets now available at cgd the sequence and annotation of c. lusitaniae strain cbs 6936, described in durrens et al. (2017) , has been made available at cgd. we provide downloads for sequences , chromosomal features , gff files and protein domain predictions . in addition, c. lusitaniae cbs 6936 is included among the datasets searchable by our multi-species blast tool . the sequence and annotation were obtained by cgd from ncbi . (posted february 27, 2018) cgd curation news c. albicans genome snapshot . c. glabrata genome snapshot . c. parapsilosis genome snapshot . c. dubliniensis genome snapshot . new papers added to cgd this week. view genome-wide analysis papers in cgd. jbrowse conservation tracks cgd has added tracks in jbrowse showing the evolutionary conservation of genomic features for c. albicans sc5314 , c. glabrata cbs138 , c. dubliniensis cd36 , and c. parapsilosis cdc317 . conservation is shown in four optional quantitative tracks, representing increasing levels of evolutionary diversity. in general, the top level (derived from an alignment of 3 closely related species) will show the highest levels of conservation, and include intergenic regions, while the lowest level (derived from an alignment of 12 distantly-related budding yeasts) will show the least conservation, and include only the most highly-conserved genes and features. conservation scores were produced with the phylop program ( siepel et al, 2005 ), based on whole-genome alignments produced by the program tba ( blanchette et al, 2004 ). conservation scores and their underlying alignments and phylogenetic models are available for download in the cgd downloads directory . please see our jbrowse help page for more information about jbrowse at cgd. (posted december 20, 2017) introducing jbrowse for cgd cgd has implemented jbrowse, the fast, intuitive, and customizable genome browser developed by the generic model organism database project ( gmod ). jbrowse allows users to quickly view large-scale sequence data in a genomic context, at multiple zoom-levels of resolution, from base pairs in individual sequence reads to read-density summaries across large genomic regions. initially, we have loaded the following datasets: gene expression in c. albicans in a variety of experimental conditions from bruno et al, 2010 gene expression in c. glabrata in a variety of experimental conditions from linde, duggan et al, 2015 high-throughput genomic sequence of c. albicans sc5314 from muzzey et al, 2013 , that was the basis of assembly 22 we will be adding additional high-throughput datasets in the coming months. jbrowse can be launched from any cgd feature's locus summary page by clicking on the jbrowse logo about halfway down the page: the jbrowse window will be centered upon that feature. alternately, mouse-over "jbrowse" on the top menu bar of any cgd page, then select and click your organism of interest in the drop-down menu. the browser window will be centered on an arbitrary location of the genome. please see our jbrowse help page for more details. (posted september 29, 2016) correction of chromosome 3 haplotype information for c. albicans sc5314 assembly 22 we have corrected the haplotype assignments on chromosome 3 of c. albicans sc5314, based on comparisons of haplotype data ( legrand et al, 2008 ; berman and forche, 2016 ) with sequence data ( muzzey et al, 2013 ) for both the wild-type diploid strain and the strain rby10-10, which is homozygous for chromosome 3a. this analysis supported the exchange of approximately 845 kbp between chromosome 3a and chromosome 3b of assembly 22 at cgd, including the entire left arm of the chromosome, and a portion of the right arm extending from cen3 to within the coding sequence of the gene c3_04040w (orf19.2804). this results in sequence and gene model boundary changes for most chromosome 3 features. (posted june 22, 2016) ensemblfungi gene annotations for candida strains not curated by cgd we now provide links on cgd homology pages and cgd multi-genome blast results pages to gene annotations from ensemblfungi for the seven candida -related strains for which we provide sequence and gene model downloads, but do not actively curate: c. albicans wo-1, c. guilliermondii atcc 6260, c. lusitaniae atcc 42720, c. orthopsilosis co 90-125, c. tropicalis mya-3404, d. hansenii cbs767 and l. elongisporus nrll yb-4239. these replace the links to annotations formerly provided by the broad institute fungal genome initiative , which are no longer supported. (posted june 6, 2016) major update of the c. albicans genome sequence at cgd we have released a major sequence update for c. albicans sc5314 (assembly 22, version s06-m01-r01). based on reanalysis by cgd of all available sequence data, the update affects more than 300 features, correcting many orf translation errors and resolving many sequence ambiguities. the specific sequence changes can be viewed on our chromosome history pages . (posted february 2, 2016) updates to c. glabrata genome annotation multiple c. glabrata gene

URL analysis for candidagenome.org

http://www.candidagenome.org/download/sequence/c_lusitaniae_cbs6936/current/
http://www.candidagenome.org/cgi-bin/compute/web-primer
http://www.candidagenome.org/cgi-bin/colleague/colleagueinfosearch
http://www.candidagenome.org/gocontents.shtml
http://www.candidagenome.org/cgi-bin/go/gotermmapper
http://www.candidagenome.org/cgi-bin/suggestion
http://www.candidagenome.org/cgi-bin/chromosomehistory.pl
http://www.candidagenome.org/news_archive.shtml
http://www.candidagenome.org/communitynews.shtml
http://www.candidagenome.org/externalresources.shtml
http://www.candidagenome.org/sitemap.shtml
http://www.candidagenome.org/cgi-bin/locus.pl?dbid=cal0000194177
http://www.candidagenome.org/download/domains/c_lusitaniae_cbs6936/
http://www.candidagenome.org/download/gff/c_lusitaniae_cbs6936/
http://www.candidagenome.org/aboutcontents.shtml

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